Services

AI-based Analysis

Organ segmentation is essential but tough and prone to errors if done by hand.

We introduced a lightning-fast deep learning solution that segments major organs, cells, lymph nodes and bloodvessels! Achieves speeds orders of magnitude faster than other algorithms.

Matches or even tops the quality of top-tier approaches and human experts.

Directly aids biomedical research, e.g. by pinpointing cancer metastases!

Our research papers include furhter insights into the algorithms:

[pubmed] Scalable tissue labeling and clearing of intact human organs

[pubmed] Deep Learning Reveals Cancer Metastasis and Therapeutic Antibody Targeting in the Entire Body

[pubmed] Machine learning analysis of whole mouse brain vasculature

[ResearchGate] MetGAN-based Data Augmentation for Improved Metastasis Segmentation in Light-Sheet Microscopy

Tissue Clearing

Discover the power of optical tissue transparency for 3D exploration of complex tissues!

Adult rodent, porcine, mokey or human organs, dense from years of life, now made transparent!

Moreover, we can scan and analyse fluorescent markers based on Cre reporter strains!

Our groundbreaking method to clear and label tough human organs, like connective tissue, bones. Dive into the human eye, thyroid, kidney, skull, etc. all at cellular detail!

Our research papers include furhter insights into the algorithms:

[pubmed] Three-dimensional imaging of solvent-cleared organs using 3DISCO

[pubmed] Shrinkage-mediated imaging of entire organs and organisms using uDISCO

[pubmed] Panoptic imaging of transparent mice reveals whole-body neuronal projections and skull–meninges connections

[pubmed] Cellular and Molecular Probing of Intact Human Organs

[pubmed] Whole-body cellular mapping in mouse using standard IgG antibodies

[pubmed] Scalable tissue labeling and clearing of intact human organs

[pubmed] A guidebook for DISCO tissue clearing

Biodistribution Assessment

A groundbreaking pipeline for automatic quantification of cancer metastases and therapeutic antibody targeting!

Enhancing the fluorescent signal of single cancer cells or CAR-T cells by over 100-fold using vDISCO method in transparent mice. Tested in 5 metastatic cancer models: including breast, lung, and pancreatic cancers.

Detailed analysis: metastasis size, shape, distribution, and antibody targeting effectiveness in whole mice.

DeepMACT can turbocharge the discovery of powerful antibody-based cancer treatments in pre-clinical stages.

Further insights of the know how are in the publications below:

[pubmed] Deep Learning Reveals Cancer Metastasis and Therapeutic Antibody Targeting in the Entire Body

Biopsy / Organ Analysis

Explore the world of spatial molecular profiling in complex tissues!

Our groundbreaking technology combines whole-organ imaging, deep-learning analysis, robotic tissue extraction, and ultra-sensitive mass spectrometry for the future of molecular analysis!

DISCO-MS matches the proteome data of uncleared samples in both rodent and human tissues. Investigate microglia activation after brain injury. Early & late-stage amyloid-beta plaques analysis in Alzheimer's disease mouse models.

DISCO-bot robotic extraction: Unveil the regional differences in immune cells in intact organisms.

Study cardiovascular and aortic plaques in unprecedented detail.

A gateway to discovering diagnostic & therapeutic opportunities for complex diseases with 3D imaging!

Further insights of the know how are in the publications below:

[pubmed] Spatial proteomics in three-dimensional intact specimens

[pubmed] Cellular and Molecular Probing of Intact Human Organs

[pubmed] Scalable tissue labeling and clearing of intact human organs

cFos-AI

Unleashing the power of tissue clearing and fluorescent microscopy for comprehensive protein expression studies in health and disease!

Introducing DELiVR a cutting-edge deep learning pipeline which uses virtual reality (VR) to generate training data for deep neural networks. VR annotation speeds up training data generation compared to traditional methods.

Pinpoints c-Fos, a marker for neuronal activity, in cleared mouse brains.

Achieves cellular-level resolution in mapping protein expression. Surpasses current pipelines with unparalleled precision in cell detection.

Discover unique brain activation pattern related to cancer and weight changes.

Dive deep into the deatils in this artice:

[bioRxiv] Virtual reality empowered deep learning analysis of brain activity

Vascular Analysis

Facing challenges with immense 3D vascular datasets? We’ve cracked the code! Introducing VesSAP: The game-changing deep learning tool for analyzing brain vasculature.

Harness the power of convolutional neural networks (CNNs) with transfer learning to achieve superb human-level accuracy.

Dive deep into the micrometer scale vascular intricacies of C57BL/6J, CD1, and BALB/c mouse brains, spinal cord and vascular graphs.

Your go-to for unbiased, scalable insights into the vascular networks of cleared mouse brains!

Here you can dive deep into our solutions:

[pubmed] Machine learning analysis of whole mouse brain vasculature

[pubmed] Mapping of neuroinflammation-induced hypoxia in the spinal cord using optoacoustic imaging

[arXiv] Whole brain vessel graphs: a dataset and benchmark for graph learning and neuroscience (vesselgraph)